People

Principal Investigators

• Neocles Leontis, who passed away on December 8, 2020. Obituary. Remembrance.
  
• Craig Zirbel

Current Members

• Sri Appasamy
• Adam Coger
• Zhicheng Ding
• Gul Bulbul
• Alex Xu
  
• Xinyu Chu

Alumni

• Jacob Mitchell, worked on base stacking, base-backbone, and core fr3d-python
  
• Deepthi Thammineni, worked on sequence variability across species
  
• Nicholas Kinyanjui, working on standardized names for RNA chains
  
• Satya Upendra, worked on alignments of RNA chains
  
• Vy Nguyen, worked on the RNA 3D motif atlas
  
• Hima Namburu, worked on circular basepair diagrams
  
• Manisha Muthuluru, master's student, worked on sequence and structure alignments
  
• Syed Muhammed Abubaker, undergraduate, worked on circular basepair diagrams
  
• Bryan Li, high school student, worked on 3D structure alignments
  
• Karthik Jagilinki, PhD student, worked on reading DNA 3D structures
  
• Quinn Eberhard 2021 undergraduate, Goldwater scholar, worked on RNA-protein alignments
  
• Seyoung Ree, high school student, worked on RNA Motif Atlas code
  
• Kateland Sipe 2021 undergraduate, worked on RNA-protein interactions
  
• Malika Haver, undergraduate, worked on SASA calculations
  
• Aylin Tanriverdi, high school student, made WebFR3D instructional videos
  
• Chaska McGowan 2020 undergraduate, worked on the database
  
• Wyatt Brown 2019 undergraduate, studied RNA-protein interactions
  
• William Xi 2019 undergraduate, ported FR3D to Python
  
• Jamie Cannone 2019 research scientist
• Jim Roll 2019 dissertation
  
• Maryam Hosseini 2018 dissertation
  
• Poorna Roy 2017 dissertation
  
• Blake Sweeney 2016 dissertation
  
• Lorena Parlea 2015 dissertation
• Anton Petrov 2012 dissertation
  
• Emil Khisamutdinov 2012 dissertation
• Anton Alenko 2012 master's student
  
• Amal Abu Almakarem 2011 dissertation
  
• Stephen Dinda 2011 dissertation
  
• Irina Novikova 2010 dissertation
  
• Ryan Rahrig 2010 dissertation
  
• Jesse Stombaugh 2008 dissertation
  
• Kirill Afonin 2008 dissertation
  
• Meg Pirrung 2008 undergraduate, ported JAR3D to Java
• Jim Zubricky 2006 master's thesis
  
• Michael Sarver 2006 dissertation
  
• Ali Mokdad 2006 dissertation
• Kristina Csaszar Burch 2002 undergraduate, Goldwater Scholar, RNA sequence analysis